DNA fragmentation of human sperm can be detected by ligation mediated real time polymerase chain reaction

Ligation-mediated polymerase chain reaction (PCR) combined with real-time PCR is a useful tool for detecting DNA fragmentation as a parameter of sperm quality in human samples.


Jung Jin Lim, Ph.D., Jin Il Lee, M.Sc., Dong Hwan Kim, M.Sc., Seung-Hun Song, M.D., Hyung Joon Kim, Ph.D., Woo Sik Lee, M.D., Dong Ryul Lee , Ph.D.

Volume 100, Issue 6, Pages 1564-1571.e5, December 2013



To determine whether ligation-mediated real-time polymerase chain reaction (LM-RT-PCR), which combines LM-PCR, and RT-PCR, can detect sperm DNA fragmentation (DF) in human semen samples.


Three-way comparison of terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL), sperm chromatin dispersion (SCD), and LM-RT-PCR for detecting sperm DNA fragmentation.


University hospital-based research laboratory.


Twenty-five men presenting at an infertility clinic.


Basic analysis of sperm concentration, motility, vitality, and morphology, with each semen sample equally divided into three aliquots that were evaluated for fragmentation using TUNEL, SCD, and LM-RT-PCR assays.

Main Outcome Measure(s):

In TUNEL and SCD assays, counts of the number of sperm with tetramethylrhodamine (TMR) red signals or no halo; in LM-RT-PCR results, evaluation of the threshold cycles (Ct) and relative fluorescence unit (RFU) values.


The median percentage of sperm with positive results for fragmentation in the TUNEL and SCD assays were 20.5% and 20.7%, respectively. To compare the accuracy of the TUNEL, SCD, and LM-RT-PCR assays, we divided the semen samples into two groups according to the TUNEL results: low and high percentage of sperm fragmentation. In the LM-RT-PCR results, the values of the cycles of threshold (Ct) and relative fluorescence unit (RFU) statistically significantly differed between the low and high percentage of sperm fragmentation groups. Comparisons among the TUNEL, SCD, and LM-RT-PCR assays revealed that the correlation patterns according to DNA fragmentation were similar in both the groups with high and low percentage of DNA fragmentation. Our morphologic analysis indicated that the fragmentation of sperm DNA did not appear to influence sperm morphology.


These results indicate that the LM-RT-PCR technique is another useful tool for detecting DNA fragmentation, a parameter of sperm quality in human semen alone or combined with TUNEL or SCD assays.

Read the full text at: http://www.fertstert.org/article/S0015-0282(13)02963-4/fulltext